PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010558174.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family C2H2
Protein Properties Length: 503aa    MW: 52392.1 Da    PI: 9.3318
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010558174.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.21.4e-056183123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    ++C++C+k F r  nL+ H r H
  XP_010558174.1 61 FVCEICNKGFQRDQNLQLHRRGH 83
                    89*******************88 PP

2zf-C2H211.90.00071137159123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     +kC++C+k +  +s+ k H + +
  XP_010558174.1 137 WKCEKCSKKYAVQSDWKAHSKIC 159
                     58*****************9876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.7E-56083IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.15E-66083No hitNo description
PROSITE profilePS5015710.9496183IPR007087Zinc finger, C2H2
SMARTSM003550.0176183IPR015880Zinc finger, C2H2-like
PfamPF121718.0E-56183IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS0002806383IPR007087Zinc finger, C2H2
SMARTSM00355190102132IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.605.4E-4125158IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.15E-6132157No hitNo description
SMARTSM00355140137157IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009937Biological Processregulation of gibberellic acid mediated signaling pathway
GO:0010029Biological Processregulation of seed germination
GO:0010431Biological Processseed maturation
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 503 aa     Download sequence    Send to blast
MPVDLDNSST VSGDASVSST GNQNPPPKSA GKKKRNLPGM PDPDAEVIAL SPKTLLATNR  60
FVCEICNKGF QRDQNLQLHR RGHNLPWKLR QRSSKEVKKK VYVCPEPTCV HHDPSRALGD  120
LTGIKKHFCR KHGEKKWKCE KCSKKYAVQS DWKAHSKICG TKEYKCDCGT LFSRRDSFIT  180
HRAFCDALAE ESARNHNHGK KQNPEMASRK NLEPDPKSPI AAHSPPPPLP PAPPPASVAA  240
AAAGQVDAKP AKVMPLSIQR SAAESPENPP EAIQEAPRTI GLNAIASNNT ASDPDTNDGN  300
SDGVFAGLFL SSTATPSLYA SSTASPSLFA PSRPIEPISL RLSTNHGSSL FGSTLQDPAQ  360
FPNPPPPAQP AMSATALLQK AAQMGASGGS LLRGLGIVPS SSSTMELSSS HDTSLAPGLG  420
LGLPCGGGNG SGLKELMMGN SSVFGPKQTT LDFLGLGRAV GGSGSPGGGL SALITSIGGG  480
GGLDVTASFG AGEFSGKDMG RSS
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00592DAPTransfer from AT5G66730Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010558174.10.0PREDICTED: zinc finger protein NUTCRACKER
SwissprotQ9LVQ70.0IDD1_ARATH; Protein indeterminate-domain 1
TrEMBLR0EWK50.0R0EWK5_9BRAS; Uncharacterized protein
STRINGAT5G66730.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15528306
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66730.11e-170C2H2-like zinc finger protein